HPC Software

This page lists software installed on the Redhawk cluster.  Use the table controls to search and sort.  Follow the links in the first column to learn more about a particular software package.  Use the module name in the fourth column to load the software. Visit the modules page to learn more about software management on the cluster.  Where a module name is not listed, view the details to learn more about using the package.

The pages describing individual software tools support comments.  Feel free to use these to add information about a package.

Contact the RCS group to request installation of additional packages or with other questions about software on the cluster.

Package NameCategoryUsage Restrictions?Acknowledgement 
ComsolEngineeringYesNone
RStatisticsNoAvailable
AbaqusEngineeringYesNone
BlastBioinformaticsNoNone
MatlabGeneralYesNone
PerlGeneralNoNone
BioPerlBioinformaticsNoAvailable
DDD DebuggerDevelopmentNoNone
Open MPIGeneralNoNone
Macaulay2MathematicsNoAvailable
COIN-ORMathematicsNoAvailable
BoostDevelopmentNoNone
BelvuBioinformaticsNoRequested
CAP3BioinformaticsYesRequested
ClustalBioinformaticsNoAvailable
EmbossBioinformaticsNoAvailable
Blast+BioinformaticsNoNone
InterProScanBioinformaticsNoAvailable
FastaBioinformaticsNoAvailable
HmmerBioinformaticsNoAvailable
HmmtopBioinformaticsYesRequired
MrBayesBioinformaticsNoAvailable
MuscleBioinformaticsNoAvailable
PCAPBioinformaticsNoNone
CD-HITBioinformaticsNoRequested
Primer3BioinformaticsNoAvailable
PaupBioinformaticsYesAvailable
PhylipBioinformaticsNoAvailable
R8sBioinformaticsNoNone
VelvetBioinformaticsNoAvailable
PythonGeneralNoNone
RepeatMaskerBioinformaticsYesAvailable
SignalSleuthBioinformaticsNoAvailable
wxWidgets (wxGTK)LibraryNoNone
TreeviewxBioinformaticsNoAvailable
VMDChemistryYesAvailable
VmatchBioinformaticsYesAvailable
GmapBioinformaticsNoNone
PhredBioinformaticsYesAvailable
PhrapBioinformaticsYesAvailable
Phd2fastaBioinformaticsYesAvailable
GMPLibraryNoNone
PariMathematicsNoRequested
NTLMathematicsNoNone
MwrankMathematicsNoNone
RatpointsMathematicsNoRequested
CL_MatcontEngineeringNoNone
AutoEngineeringNoNone
GamessChemistryYesRequired
SASStatisticsYesNone
AutoAssignChemistry - NMRYesRequired
CyanaChemistry - NMRYesRequired
CCP4Chemistry - NMRYesRequested
CNSChemistry - NMRYesRequired
APBSChemistryNoAvailable
Solve/ResolveChemistry - NMRYesRequested
RasMolChemistry - NMRNoAvailable
ShelxChemistryYesRequired
AutoDockChemistry - NMRNoAvailable
JmolChemistryNoAvailable
DockChemistry - NMRYesRequired
DSSPChemistry - NMRYesRequested
MolMolChemistry - NMRNoRequested
HKL2MAPChemistry - NMRNoRequested
MDDNMRChemistry - NMRNoRequested
memeBioinformaticsYesAvailable
Xplor-NIHChemistry - NMRYesRequested
XtalViewChemistry - NMRYesRequested
IMSLStatisticsYesNone
SparkyChemistry - NMRNoAvailable
PymolChemistry - NMRNoAvailable
QueenChemistry - NMRNoAvailable
PhenixChemistry - NMRYesRequested
AutoStructureChemistry - NMRYesRequired
NMRPipeChemistry - NMRYesAvailable
MorassChemistry - NMRYesNone
CootChemistry - NMRNoAvailable
MUMmerBioinformaticsNoAvailable
MetaSimBioinformaticsYesRequested
SoapBioinformaticsNoAvailable
TGICLBioinformaticsNoNone
RosettaChemistry - NMRYesRequired
ARP/wARPChemistry - NMRYesAvailable
LAMMPSChemistryNoAvailable
CS_RosettaChemistry - NMRNoAvailable
MiraBioinformaticsNoAvailable
MPFRLibraryNoNone
MPCLibraryNoNone
GCCDevelopmentNoNone
NeditGeneralNoNone
LADRMathematicsNoNone
SageMathematicsNoRequested
MathematicaGeneralNoNone
XalanGeneralNoNone
SaxonGeneralNoNone
GaussianChemistryYesRequired
StataStatisticsYesAvailable
SAMtoolsBioinformaticsNoAvailable
AMOSBioinformaticsNoNone
alien_hunterBioinformaticsNoAvailable
ArtemisBioinformaticsNoAvailable
ActiveTclGeneralNoNone
MosflmChemistry - NMRNoAvailable
iMosflmChemistry - NMRNoNone
Intel CompilersDevelopmentNoNone
Intel MKLLibraryNoNone
JAGSStatisticsNoNone
ParaviewGeneralNoNone
PdbStatChemistry - NMRYesNone
SeqCleanBioinformaticsNoNone
LucyBioinformaticsNoAvailable
GAMSMathematicsNoNone
SSAHA2BioinformaticsNoAvailable
KcachegrindDevelopmentNoNone
ASDPChemistry - NMRYesRequired
ValgrindDevelopmentNoNone
StadenBioinformaticsNoNone
SeqtrimBioinformaticsNoRequested
GMT - Generic Mapping ToolsGeneralNoAvailable
NetCDFLibraryNoNone
OpenCVLibraryNoNone
CmakeDevelopmentNoNone
RCIChemistry - NMRNoNone
PalesChemistry - NMRYesRequired
BtrimBioinformaticsNoAvailable
FastxBioinformaticsNoNone
SWIGDevelopmentNoNone
GHMMLibraryNoNone
ArgtableLibraryNoNone
MothurBioinformaticsNoAvailable
DelphiChemistryYesRequested
FastTreeBioinformaticsNoNone
WebMOChemistryYesNone
OOMMFPhysicsNoRequested
ImageJGeneralNoAvailable
GNU Scientific LibraryLibraryNoNone
MAFFTBioinformaticsNoAvailable
AmpliconNoiseBioinformaticsNoNone
GATEText ProcessingNoRequested
MetaVelvetBioinformaticsNoAvailable
YaehmopChemistryNoNone
StarBioinformaticsNoNone
GnuplotGeneralNoNone
EmanChemistryNoAvailable
ChimeraAudacityChemistryYesRequired
AudacityAudio File ProcessingNoAvailable
GNU EmacsText editingNoAvailable
Spheral++Numerical SimulationNoAvailable
vmd-xplorNMR VisualizationNo Available
GromacsMolecular DynamicsNoAvailable
Grace2D plottingNoAvailable
AvogadroMolecule editor and visualizerNoAvailable
AmberTools13Molecular DynamicsNoAvailable
PhaverGeometryNo Available
QiimeMicrobioNoAvailable
eLSA python moduleGeologyNoAvailable
ChGeneralNoNone
RootData analysis, C++ InterpretersNoAvailable
MapleGeneral purpose scientific computingNoAvailable
NuSMVSymbolic model checkerNoAvailable